%CASTOR class definition
%
%   Usage:
%      cluster=castor();
%      cluster=castor('np',3);
%      cluster=castor('np',3,'login','username');

classdef castor
	properties (SetAccess=public)
		% {{{
		name='castor'
		login='username';
		np=128;
		port=0;
		queue='shortc';
		time=180;
		codepath='/workp/edw/issm-2.0/bin'
		executionpath='/workp/edw/Testing/Execution'
		%}}}
	end
	methods
		function cluster=castor(varargin) % {{{
			cluster=AssignObjectFields(pairoptions(varargin{:}),cluster);
		end
		%}}}
		function disp(cluster) % {{{
			%  display the object
			disp(sprintf('class ''%s'' object ''%s'' = ',class(cluster),inputname(1)));
			disp(sprintf('    name: %s',cluster.name));
			disp(sprintf('    login: %s',cluster.login));
			disp(sprintf('    np: %i',cluster.np));
			disp(sprintf('    port: %i',cluster.port));
			disp(sprintf('    queue: %s',cluster.queue));
			disp(sprintf('    time: %i',cluster.time));
			disp(sprintf('    codepath: %s',cluster.codepath));
			disp(sprintf('    executionpath: %s',cluster.executionpath));
		end
		%}}}
		function md = checkconsistency(cluster,md,solution,analyses) % {{{

			available_queues={'shortc','longc'};
			queue_requirements_time=[180 720];
			queue_requirements_np=[128 128];

			QueueRequirements(available_queues,queue_requirements_time,queue_requirements_np,cluster.queue,cluster.np,cluster.time)
		end
		%}}}
		function BuildQueueScript(cluster,dirname,modelname,solution,io_gather,isvalgrind,isgprof,isdakota,isoceancoupling) % {{{

			if(isvalgrind), disp('valgrind not supported by cluster, ignoring...'); end
			if(isgprof),    disp('gprof not supported by cluster, ignoring...'); end

			%write queuing script 
			fid=fopen([modelname '.queue'],'w');
			fprintf(fid,'#!/bin/sh\n');
			fprintf(fid,'#PBS -l walltime=%i\n',cluster.time*60); %walltime is in seconds.
			fprintf(fid,'#PBS -N %s\n',modelname);
			fprintf(fid,'#PBS -l ncpus=%i\n',cluster.np);
			if ~isempty(queue),
				fprintf(fid,'#PBS -q %s\n',cluster.queue);
			end
			fprintf(fid,'#PBS -o %s.outlog \n',modelname);
			fprintf(fid,'#PBS -e %s.errlog \n',modelname);
			fprintf(fid,'export PBS_O_WORKDIR=%s\n',[cluster.executionpath '/' dirname]);
			fprintf(fid,'cd $PBS_O_WORKDIR\n');
			fprintf(fid,'export OMP_NUM_THREADS=1\n');
			fprintf(fid,'dplace -s1 -c0-%i mpiexec -np %i %s/issm.exe %s %s %s',cluster.np-1,cluster.np,cluster.codepath,solution,[cluster.executionpath '/' dirname],modelname);
			fclose(fid);

		end
		%}}}
		function UploadQueueJob(cluster,modelname,dirname,filelist) % {{{

			%compress the files into one zip.
			compressstring=['tar -zcf ' dirname '.tar.gz '];
			for i=1:numel(filelist),
				compressstring = [compressstring ' ' filelist{i}];
			end
			if cluster.interactive,
				compressstring = [compressstring ' ' modelname '.errlog ' modelname '.outlog '];
			end
			system(compressstring);

			%upload input files
			issmscpout(cluster.name,cluster.executionpath,cluster.login,cluster.port,{[dirname '.tar.gz']});

		end %}}}
		function LaunchQueueJob(cluster,modelname,dirname,filelist,restart) % {{{

			%Execute Queue job
			if ~isempty(restart)
				launchcommand=['cd ' cluster.executionpath ' && cd ' dirname ' && qsub ' modelname '.queue '];
			else
				launchcommand=['cd ' cluster.executionpath ' && rm -rf ./' dirname ' && mkdir ' dirname ...
					' && cd ' dirname ' && mv ../' dirname '.tar.gz ./ && tar -zxf ' dirname '.tar.gz  && qsub ' modelname '.queue '];
			end
			issmssh(cluster.name,cluster.login,cluster.port,launchcommand);
		end %}}}
		function Download(cluster,dirname,filelist) % {{{

			%copy files from cluster to current directory
			directory=[cluster.executionpath '/' dirname '/'];
			issmscpin(cluster.name,cluster.login,cluster.port,directory,filelist);

		end %}}}
	end
end
