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SNPs associated with environmental adaptation in sago (2020)
  • 2022/02/18 22:34
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English name
SNPs associated with environmental adaptation in sago (2020)
CSTR
CSTR:11738.11.ncdc.ZDYF.db1669.2022
DOI
10.12072/ncdc.ZDYF.db1669.2022
Share type
Online
Category
Desert
source site
Key technologies and demonstrations for desertification control in semi-arid desert areas in northern China
contributors
Ma Xiaofei , Yin Xiaoyue , chaojuqian
Datasets description

  Genetic adaptation analysis of the environment in the sandy sandy area of Shami was carried out by RAD population sequencing, and 6124 SNPs were finally obtained after SNP calling and quality control of the obtained data, which were combined with the WorldClim database version 1.4 (1950-2000,). Combined with the ecological factor data downloaded from WorldClim database version 1.4 (1950-2000,), the correlation analysis between SNP diversity and environmental factors was carried out using Samβada software, and the correlation was determined by G-scores>0.0001 to obtain the SNPs related to the environmental adaptation of sago.

Base information
collect time 2020/01/01  -  2020/12/31
collect place Northern semi-arid region
data size 150.3 KiB
data format excel
Coordinate system
Data thumbnail
Data source description

  Genetic adaptation analysis of the environment in the sandy sandy area of Shami was carried out by RAD population sequencing, and 6124 SNPs were finally obtained after SNP calling and quality control of the obtained data, which were combined with the WorldClim database version 1.4 (1950-2000,). Combined with the ecological factor data downloaded from WorldClim database version 1.4 (1950-2000,), the correlation analysis between SNP diversity and environmental factors was carried out by using Samβada software, and the correlation was determined by G-scores>0.0001 to obtain the SNPs related to environmental adaptation in sago.

Data processing method

  Genetic adaptation analysis of the environment in the sandy sandy area of Shami was carried out by RAD population sequencing, and 6124 SNPs were finally obtained after SNP calling and quality control of the obtained data, which were combined with the WorldClim database version 1.4 (1950-2000,). Combined with the ecological factor data downloaded from WorldClim database version 1.4 (1950-2000,), the correlation analysis between SNP diversity and environmental factors was carried out by using Samβada software, and the correlation was determined by G-scores>0.0001 to obtain the SNPs related to environmental adaptation in sago.

Data quality description

  Data quality is good.

Project information
# number name type
1 2016YFC0500900 National key R & D plan
Citations and annotations
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For the achievements published in English, please refer to the following specifications： The dataset is provided by National Cryosphere Desert Data Center. (http://www.ncdc.ac.cn).

Data reference
  1. Ma Xiaofei, Yin Xiaoyue, chaojuqian. SNPs associated with environmental adaptation in sago (2020). National Cryosphere Desert Data Center(http://www.ncdc.ac.cn), 2022. https://cstr.cn/CSTR:11738.11.ncdc.ZDYF.db1669.2022.
  2. Ma Xiaofei, Yin Xiaoyue, chaojuqian. SNPs associated with environmental adaptation in sago (2020). National Cryosphere Desert Data Center(http://www.ncdc.ac.cn), 2022. https://www.doi.org/10.12072/ncdc.ZDYF.db1669.2022.
license agreement
Creative Commons License   This work is licensed under a Creative Commons Attribution 4.0 International License.
# title file size
1 _ncdc_meta_.json 4.4 KiB
2 沙米环境适应性相关SNP（2020年）.xlsx 145.9 KiB
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Service information
contacts:
Min Yufang
phone:
0931-4967596
mailbox:
ncdc@lzb.ac.cn
Contact information
contributors:
Ma Xiaofei , Yin Xiaoyue , chaojuqian
author:
Ma Xiaofei
manager:
MIN Yufang

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